NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181365_1036198

Scaffold Ga0181365_1036198


Overview

Basic Information
Taxon OID3300017736 Open in IMG/M
Scaffold IDGa0181365_1036198 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1244
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008689Metagenome329Y
F013760Metagenome / Metatranscriptome268Y
F028165Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
Ga0181365_10361982F013760GGAGGMIPFALGALVGAGCVVVWSEMYTRWLYKDVKRRAKAQGITDQQMKDALLWAASENIEESLDGSTTRSR
Ga0181365_10361983F008689N/AMRFGEVIQALMAGGGNAVWRQDWDGQVFLRYSELWNAFEVHTTGEAVRQMDELSLSPGDLFATDWAVVVLDPRTGEVAR
Ga0181365_10361985F028165N/AEEKKERIRQAMEIYATTGSWSNADNIVRRQSVEKWIRNSELLAYAQSLGYQQMCTDAVATFAPPTANYSNRMVFSAALIHLKESRYVARDGARIHYAVQHGQLVMYKLDGAGTRHHAGPAYFRGADILANDWMIIR

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