Scaffold Ga0181365_1036198

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1036198
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1244
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008689	Metagenome	329	Y
F013760	Metagenome / Metatranscriptome	268	Y
F028165	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10361982	F013760	GGAGG	MIPFALGALVGAGCVVVWSEMYTRWLYKDVKRRAKAQGITDQQMKDALLWAASENIEESLDGSTTRSR
Ga0181365_10361983	F008689	N/A	MRFGEVIQALMAGGGNAVWRQDWDGQVFLRYSELWNAFEVHTTGEAVRQMDELSLSPGDLFATDWAVVVLDPRTGEVAR
Ga0181365_10361985	F028165	N/A	EEKKERIRQAMEIYATTGSWSNADNIVRRQSVEKWIRNSELLAYAQSLGYQQMCTDAVATFAPPTANYSNRMVFSAALIHLKESRYVARDGARIHYAVQHGQLVMYKLDGAGTRHHAGPAYFRGADILANDWMIIR