Scaffold Ga0181365_1026402

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1026402
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1465
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F021063	Metagenome / Metatranscriptome	220	N
F033721	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10264021	F021063	GGAG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRLLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKNGTVGWWCRASGVRIDNRTLLRKLQENDYALP
Ga0181365_10264022	F003304	AGGA	MKQAMVTQSFGDDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVELGR
Ga0181365_10264024	F033721	AGGAGG	MRWIKKEFDDDGKPEWAVYIDETGEGREEDWSHYDTFETRDEAIKGCRSVTWEDYDCSDK