Scaffold Ga0181365_1016716

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1016716
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1843
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Yellowstone lake phycodnavirus 2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011918	Metagenome / Metatranscriptome	285	Y
F031024	Metagenome / Metatranscriptome	183	N
F058800	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10167161	F031024	AGGAGG	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHDTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDNAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPK
Ga0181365_10167162	F058800	AGGA	MKQALSRLFYFLGDTISRTLLRAGIGYGLYKTFMLWSIELDEKFDVWKEVKQKRRRKK
Ga0181365_10167167	F011918	N/A	TDCAQLWAYRAASENPKCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWAWVKNYTPPGMKL