Scaffold Ga0181365_1010085

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1010085
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2349
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F023295	Metagenome / Metatranscriptome	210	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y
F067530	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10100851	F002843	N/A	IVPVDIVAVQVNQNNSLFVTTGVDYDSDGTIVGSEITSQYTLNPGDSLEGQPTEVVSIANALWTPAVVAAYKAANPAPDNSVPVS
Ga0181365_10100852	F067530	N/A	MQTLTLTLDPATANALITALEVARRQGDFAVARTAVGIISELIRQDEEFKKLNPPVQVQTAE
Ga0181365_10100855	F023295	AGGCGG	MLLSMLHGIGCQTRVILVPDGQPVQLAEPVRAKVFAFDATGKPVPSSNKVILPAGWYVLPRK
Ga0181365_10100856	F063343	N/A	MNYLILLGILGLFIFGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFVQATFSWVRNPASWVRVFNWTGVSAGINGLGGVGGGTLISRRHVLFANHVPYPARPIDIFFVNKDSRTFNYKVTNVQQVGSTDIAIGTLDKDADPSLIVYRVLPDNWLQYIANKPVPLTATYIAAGITTPIQTFVLPVLYTGQDRKVSTADVININLAGNASVSIPAFEPARAFGDGVRGGDSGNPIFAMLGDELVLLGGWYTGADGDATVGTFPWLLYQKSAIEKIMGMKLQVADMSGLTRIA
Ga0181365_10100857	F048257	N/A	MIAFPSSVAARKLIKGENYTESAYWVLKRTLLIRSGLSLAGEKKGIWKKSLYGSLAVQAFVTAWTATHMDEPVASLPSGEVAVQKDVLGILGTYLLRSAIVGTGLWLSGERKNLTRN