Scaffold Ga0181365_1004593

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1004593
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3376
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F002207	Metagenome / Metatranscriptome	583	Y
F003603	Metagenome / Metatranscriptome	477	Y
F037727	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10045931	F003603	AGGCGG	MKTKEEQIGELLANSVEDHFFNPAALGRYLAEQPTYTLDRIMEVVAWVIEKQARRYDREVETGGQVSEGLAIAHKLDTVIDKIKITNNFKNIKLPITPKERAEFIKSLPKEQEQSYRYSWLHETNNGSNTFANQGM
Ga0181365_100459312	F002207	N/A	KSEVDMIKDRLNKPFTLAQENHGMGDINPHGFPTKIKLVEYNNPVFAFYNIHSYRDEGITDEEYACQPDRSGLDMNDPDWFPKSVAFAKTQKDWYSWNNSNWGSKWDVAVSDDVKYPET
Ga0181365_10045934	F001019	GAGG	MSDYVPSLEILEVNYSCSPGGIDMFKVYDKSDIPLDIPIYETQSLTEAVLFCYNLGKDFTVRTYAEWEERESLYASV
Ga0181365_10045937	F000263	AGG	METLYKDDELPSHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLSWAIDIEKETEEAMDSMSRTECEGRLDTLVELYKLTYDLSFAIGVRDEASR
Ga0181365_10045938	F037727	AGAAGG	MHKSSKFLEYIKLHRISLIQDNENLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNEN