Scaffold Ga0181365_1000365

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1000365
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10077
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017592	Metagenome	239	Y
F019944	Metagenome	226	Y
F068571	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_100036516	F017592	GGAG	MDDGDYTGIDELMHWATTIILVLMTIVFFAAIAGFIWAML
Ga0181365_100036517	F019944	N/A	MNSEEDEFRRIEAEALRRAARDEDDDTQVYAKPWQGLTWKDMPEEYAGDSSFLSGARWAEARLKERNT
Ga0181365_10003652	F068571	AGGAG	MKAIPRETLRAALRAKYGRYRITRHLSFKGWSRSDHVHVYGLMPDDRTVGWWLMGDILTAELWLGLHEELK