Scaffold Ga0181431_1036052

Overview

Basic Information

• Taxon OID: 3300017735
• Scaffold ID: Ga0181431_1036052
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1129
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F023484	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181431_10360521	F020110	N/A	LLDPCLIFCPAFPIRLMSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIDLSDDGPSLEESSEPINTSSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA
Ga0181431_10360522	F023484	GAGG	MNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNSYDSDKAIDADQVAKCKTFIRDHS
Ga0181431_10360523	F022313	N/A	MTYHYQPQQEYELTKLERILKELQSVIEREKKRHMMDEHLTHSMRDLLEYEIIPMLEAEVNYDPTPQTSYDFFHQ