Scaffold Ga0181431_1000340

Overview

Basic Information

• Taxon OID: 3300017735
• Scaffold ID: Ga0181431_1000340
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15218
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040126	Metagenome / Metatranscriptome	162	N
F045679	Metagenome / Metatranscriptome	152	Y
F054413	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181431_100034019	F045679	N/A	MVKVKTITLNGKVSEYDVKYTKAYVAKIISAQSDLYQELTPESLPYNAVKEIYVDGILEAELIGSNLLYVQKRPKHDPYVDRHAPKEEFDEDHALDMVMNNMLEDFTDEEIEEMMKPESSIYLQSVTSPPPYWVTDTTAGNVDISYTN
Ga0181431_100034033	F040126	N/A	MKKVPLFEDFVPVGFGGSNAANFGLGGGYKETGYNMDAIVGPVEQCSNHVAEQANSYESNDNPEHTAESYIKEAKKHINDKIDEACENYSAMSESTLNEGTDISSWNQAGIKGDANAQITTFVGPKDVESFGLGRKCMQINIGRNYVQLNPADIVELKELLKNYKV
Ga0181431_10003408	F054413	N/A	MAKLKKKYSRSKSELLKSLKKIERQSVVLSIEVIETSKIKDHLIYECVYLDNNVEKQINIIARDITEAMQKLEPYVGSGIPDTTTNLILGSERYANVPLDPPV