Scaffold Ga0187222_1091486

Overview

Basic Information

• Taxon OID: 3300017734
• Scaffold ID: Ga0187222_1091486
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 690
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004404	Metagenome / Metatranscriptome	439	Y
F026307	Metagenome	198	Y
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187222_10914861	F026307	N/A	NDCAKLFTVKHIAESLLNVEKWKVKDLLRIKKSCLYSQSVVENYKDKILNAWKDQDLKYLADLDYIALIDWKHHKEILERRSA
Ga0187222_10914862	F087744	GAGG	MSKNILVTFDMQIGDYEHSDKYIFHNKTTDYKYCKQFWSLKKKNKLDEGVYWDNQGLNAISVYSIQEITDQEVKTLKKLGVA
Ga0187222_10914863	F004404	GGGGG	MNDDSSYNKLNKTIKEFNDYLAKINKEITVDEHSLAIHYDYDIVPLPDDIIDKA