NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181426_1040807

Scaffold Ga0181426_1040807


Overview

Basic Information
Taxon OID3300017733 Open in IMG/M
Scaffold IDGa0181426_1040807 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)915
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033798Metagenome176Y
F050375Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0181426_10408071F050375N/AMNKFGTIGPYDCEGNQVEMDWKWIDDEMEATITEMRFDGVKVKINNVAEWIVDSLFQEVPYDELMN
Ga0181426_10408074F033798N/ADRMMNDEPMKWQGWMMDMDTNKLSLEAFRKWLSAEWYEKELLRDDFPELAFLDDDMLVMEMQHELLASLN

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