NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181426_1021192

Scaffold Ga0181426_1021192


Overview

Basic Information
Taxon OID3300017733 Open in IMG/M
Scaffold IDGa0181426_1021192 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1275
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052873Metagenome142Y
F055627Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0181426_10211921F055627N/AGHMSYSIMSSYLFNCIYSFICITLKYIFYSHYKRGMPSNKKLSFGPASKMPEVPKGEYAELTFSNEGDLMWEHKEDGEYGMKFFIPIVLLSHPSVESLPSSGSAMHWVSKADAASQLYMVVTESVDAPNLKKEIFGKKWKLTRSITGSYRLDQA
Ga0181426_10211923F052873N/ASYGKKGTINNSKKAFSAVTKTASKINKGAKVAKSGITRKIGLAVKRIL

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