Scaffold Ga0181426_1001286

Overview

Basic Information

• Taxon OID: 3300017733
• Scaffold ID: Ga0181426_1001286
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4973
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049942	Metagenome / Metatranscriptome	146	N
F090086	Metagenome	108	N
F101177	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181426_100128614	F090086	GGGGG	MTQGDYVKVSSTTEVDAKLKHLETRIRGWNYQSPLAIKLMPFTDPTSLSQEALFNIWCREIADQMKKKAPDADAEAWKLWLKHKFLGTYAVKVGRESIDGQVYATPKG
Ga0181426_10012867	F049942	GGAG	MDKDIEYLNDLDRGDFDCRKGYPHKEGQSHAYDIGYGARYVLEQMQSAGAIE
Ga0181426_10012869	F101177	AGGAG	MFKQYEDPNRTGSPDDIFNKFIGDLTGRDADDLDFYEQRPIDPEPSQYEKEQEAIRMAEHKKDVDYFMRKQINQYARSSEQRDFLLKQHGLEVE