Scaffold Ga0181415_1010056

Overview

Basic Information

• Taxon OID: 3300017732
• Scaffold ID: Ga0181415_1010056
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2257
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008817	Metagenome / Metatranscriptome	327	Y
F033392	Metagenome	177	Y
F043139	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181415_10100561	F043139	AGG	MAYKNPNDPEVLKRRAKMDFAYMNTERGFIMSCIARKFKPSAKKYGGHPAHESMDKKEFWRLYMNHIILMREKFPDTDGRLCRYCEQPFTFETRMGIRGKGQPKSRATQNYNNFSIDRFDPR
Ga0181415_10100565	F008817	AGGAG	MKYTVVKRIHFSHSNDYVSVVKEAETFEDAMKFKVAAEMLETKDSGNTIQILISTDDAFDFTRTPLRLTDEVKQAS
Ga0181415_10100567	F033392	AGG	MEFLLTLFICTGIGNSCLPVTQDMYSYQINHNTFSSCIKDGLGQSFEIFYKSELLTEEQINGSRMYPRFVCEPYVPEQAET