Scaffold Ga0181415_1001102

Overview

Basic Information

• Taxon OID: 3300017732
• Scaffold ID: Ga0181415_1001102
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7295
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007609	Metagenome / Metatranscriptome	348	Y
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N
F105900	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181415_100110213	F057678	N/A	MVEYEINDRIVFRYNNVNEIGVITNVRRHKKTVIGYDIRSEKGSGYILVQVESNLTTRQRNRRTEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRANFPKGYPLYFDGENGGGMHQFEKHNDLIFPTQGPRSF
Ga0181415_100110214	F061281	N/A	MNKFKKRVLKQFPNAYVESSANGLCIINNDQVLAEEFYMPDTHCEDRAWEYASLACKLTQNFNRAHPSRMDLSAVENKLARINRRKRNGRRVK
Ga0181415_100110216	F105900	N/A	MGRVNNAYAYDKKRSKRMGKLYNTIDFNVSEKISGELFSKVPEKPVVGELEIGGKSFKVTYQEIDAIMSTLQEAKRTVEAKYRLGLMNK
Ga0181415_10011027	F007609	N/A	MITLENISTGEVFIGDEIEFFIDDDTLIGEVFLDGDLVFQSLDVIDDEQLEHELKKEFKILEEHEDIVF