NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181415_1000436

Scaffold Ga0181415_1000436


Overview

Basic Information
Taxon OID3300017732 Open in IMG/M
Scaffold IDGa0181415_1000436 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11809
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (26.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005934Metagenome / Metatranscriptome386Y
F037985Metagenome167N
F079232Metagenome116N
F103919Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181415_100043610F103919N/AMEHLFGDPVGEIESIIDDMKRGTSEQVYIDGVGWCREVTVNRYNKYGVNEPYCIYEPVED
Ga0181415_100043617F037985AGAAGMKKITTASKSQLRLRFIACIYAIVYVITLPSIYGVLPSYSSYYSLGQEWYALATSAVALGMWLHRDIKWSIPAYALVGVALFNYIDYYMIHHILAIIFFTSSTYIMYKDKRYGRFGDVSITWYILLALPGGIFWFEAIQALLITGFHISYVRRLWRVRSEKE
Ga0181415_100043624F005934N/AMDSKNYFVTKGFKLYAVMTASDKYTQGIDILYPSTPIKSDNQPAVYILTDRAGKLLKIGETQNLTSRFYKAYRCISNTTNDRIRKFIKEQEDIWVYVLPMPVVTQKILGYECGTSYAKGLEYHLLKEYKDQYKKVPPLNSILS
Ga0181415_100043626F079232N/ARDMQKAKRTKKAKTFKYGIEITKPWSKEMYAHNRRTEKHLKDQIKNAFTKTYASEPYQEDSLRDMANEMAGCRYGQGFSIQDIIDDALKNLEYMAGFQLHETMYYLHHKGYVKTQALGLIGYQPDPHLTPYWDVEDADFNAEVEDELEWIPNS
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