Basic Information | |
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Taxon OID | 3300017731 Open in IMG/M |
Scaffold ID | Ga0181416_1001182 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6633 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035490 | Metagenome | 172 | N |
F073760 | Metagenome | 120 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181416_10011821 | F073760 | GAGG | MENNSITLDLYEMQSAAHLGILRCLESEKYQEKWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQ |
Ga0181416_100118214 | F035490 | GAG | MNKIKLGTRTWLNAKGKKLKAFTFTYKDQGKKKVIQSPNKKWLEQEAERTLLRTGNINPKNIDLSISVNLEYVWDIYKKKCLARAYEPTTRFSKTTFKEYSEHYKHILKHCGNVDLTKIDATYIANFLDKLAEQKHEYKTKIFHTFSRIYDTQVGHNKPFSSNIFKTGSFFDKEDKPQPKQHCKINFEEWNFDRIKTIISKIPSKPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEITNSVDFEKNLVPPKTKAGYRELEISVSLKDQLIDYINNLPKDQECLFLNARGKFYDLKNMITCLDKAVESLNLKLPVDRKTYFFRHWNVSYWCYQGKYTNPFDLATHMGDLDLKFINTNYIKKYATSKDSVKYSDHQTNNYNWN |
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