Scaffold Ga0181416_1000947

Overview

Basic Information

• Taxon OID: 3300017731
• Scaffold ID: Ga0181416_1000947
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7393
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026408	Metagenome / Metatranscriptome	198	Y
F072251	Metagenome	121	Y
F084854	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181416_10009471	F072251	N/A	MKLLMEQWRKFLDEGITDVVYHYTNGLEKGAKILDQNKFLASGGFTKDVESELGKGKLYYFSTARTAANAYTGTYPQGVIFKLDGRALGQKYKGVPLDYWATKKRSSKKAANLDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFA
Ga0181416_100094717	F084854	AGG	MLYTLKVVATMIVSFAAGIVLHRMLWRFFDWVLDKIESYDGEEL
Ga0181416_10009475	F026408	AGGA	LNRRGMALILVLVMSALIGMSAMLLFSTTNMETMISGNVRRINQAKMSSMSGLNHFTALRFNYDALREQAGDLQTLQILSETRLSDRTFYEVKVHFCCGLNEGEYIVESIGYYKKSDKILASKITRALFSSGQTN