Scaffold Ga0181416_1000142

Overview

Basic Information

• Taxon OID: 3300017731
• Scaffold ID: Ga0181416_1000142
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18466
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y
F052205	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181416_100014218	F052205	GAG	MNDDWIDNLLDGEPSGITDTQWLIIESNINQTSLTTQMKSDIINRINDLSQLEAEEIITIINNNRYEKDTQKQWLKMFRDGVFKGRDF
Ga0181416_100014219	F018080	N/A	MGYLKVEIFKHFLKTYTYIIWEDKHILGFIGEDDIMKLLDKKQLVDFYHFDKTIFKVEKSKIHKYITKDD
Ga0181416_100014231	F024889	N/A	MMNSITVGALMIVGVVILYIFALCYVEGKIAKQENEKLEENIDKIDDKA
Ga0181416_100014233	F008782	N/A	MKKPIFRVFISYEIKSKKAVTRKVTTGTLDTFVLTSNINEIKKDQEIIDRICYLNKKNLNKVDITITDIDIENQYGETTDRFDDEY