Scaffold Ga0181417_1000028

Overview

Basic Information

• Taxon OID: 3300017730
• Scaffold ID: Ga0181417_1000028
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45092
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (29.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F039679	Metagenome	163	Y
F059455	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181417_100002817	F039679	AGG	MSAKNSHLTIREDLVEEVLSVPVRFLDYQEDAWVTDSDTLNIDQEYVPENGEQLDDISGYNMIIKITDPSQKDKYGDLWEERLAFAISADFDWN
Ga0181417_100002820	F007770	N/A	MSGEGLSVSFKRTQKTSKSNQQLLREFQRIIYASRVTTHMKWYGEAHSVDILEHGDDNRPKFQQEYVAIKDTFQFEISVYESWYQDADLYESHKREDSFVSFARKFAEDNNLMYFPEGYPAEWIETETIDGKRCWNHYNVKPDDKNIDKICEVWYKYGMKKLQNDSDSLWYNARDEIKQLMENKNECEYAR
Ga0181417_100002821	F016956	AGAAGG	MIDIIKTWKAPKEVALAIIDLALTHIKKVELNPDVKTEGDNFDYWNSYDLGDGNYVDYNIHCGDEWCVVKQDGSGEYEYTDPSTWSWDVACYAVDPPTKNNPYHQIDTDREQYLFSYNKSYGGKEVEFEN
Ga0181417_10000283	F059455	GGA	MNKELKEEIVWSKGRTREEMAKQTSWSSSKDYSGLSGLKFHCYSHNKDVGITAITSQGVSHNKYLQIPVDKIDEVCKTLMQAKKVMESNNEKI