Scaffold Ga0181396_1046158

Overview

Basic Information

• Taxon OID: 3300017729
• Scaffold ID: Ga0181396_1046158
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 868
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023860	Metagenome / Metatranscriptome	208	N
F041249	Metagenome	160	Y
F085570	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181396_10461583	F041249	GGA	MDEEQLLKSTSKRTRRNANTIKYGMFGLSLGERNYNRLHDYCTRHNLYKATLVKSLIVDYLDRAEQKTKDEQ
Ga0181396_10461584	F085570	AGGA	MHIDSYKIWSYDYDFKNGKRSKTTSIKQHLVSEECIDSKSLINLLSDLDTAWHNGYGKNIKVEVTFEPHEGE
Ga0181396_10461585	F023860	AGGAG	MDKMKDMFELRNAVRHFLEDKLEAKVQGAGMSMTEPSSADISFKIDNTNYVL