Scaffold Ga0181396_1004265

Overview

Basic Information

• Taxon OID: 3300017729
• Scaffold ID: Ga0181396_1004265
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2938
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F103165	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181396_100426511	F103165	N/A	CQITGKYFEDTLIAKTAVRVSDYPSEPSWGIYKTYDGAAILCDCDVDHAKGELNNDS
Ga0181396_10042654	F001655	GGAGG	MKQPENGHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLYENFEASVQRTAKALAESYTYWPDGYVHVQTIINQEYVNII
Ga0181396_10042655	F002858	AGGAG	MLIDEKSIYVVDGGDYSIYCLGYTQARTVTNDIMKADPWGGIPFVLRKDLEFSLDDRGNVVMSKSTLDKILDLASDDLPEGDE