Scaffold Ga0181419

Basic Information
Taxon OID	3300017728 Open in IMG/M
Scaffold ID	Ga0181419_1007307 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3355
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3355

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F002586	Metagenome	546	N
F005019	Metagenome	415	Y
F006528	Metagenome / Metatranscriptome	371	Y
F016274	Metagenome	248	Y
F026711	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181419_10073071	F002318	N/A	KAKDFKSITEDLEQRNPGKKFYSFMDMEDAEIRKKEVILPLPKKYFNNIVKLIKGRNE
Ga0181419_10073072	F026711	AGG	MNKRISQYDAEMVADWFNGSNLVHSSIADNKQIKKLFEQSEKLRQKAHKIIVDDATWKFEFKRGNQRKLKVKYNYDKK
Ga0181419_10073073	F016274	N/A	MTRNKFGLPLIYDFNIALRDKRRIRNLEYMRWNCPKGWESLWSKKLDQLKKNINERKRQTLN
Ga0181419_10073074	F006528	N/A	MKEKDKLSTKLNIEKLAIQTFKNIIEGSRSINGVTWNRIKNLRRKDQIECLRTLR
Ga0181419_10073077	F005019	AGGA	MNMYGDVRQCVKCGMSADIIEKGKDYCASCWFKYFSGETIEEYEKRVKQLDQARKDKQKNNG
Ga0181419_10073079	F002586	AGGA	MIKVKLEPNEVELALNIASKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGKYILIIKDNNEDFNFSIMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELKELKPLEENVGQDKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181419_1007307

Overview

Ecosystem & Geography

Associated Families

Sequences