Basic Information | |
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Taxon OID | 3300017728 Open in IMG/M |
Scaffold ID | Ga0181419_1003618 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4932 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004629 | Metagenome | 430 | Y |
F004990 | Metagenome | 416 | Y |
F008915 | Metagenome / Metatranscriptome | 326 | Y |
F011253 | Metagenome | 293 | Y |
F015659 | Metagenome | 253 | Y |
F046315 | Metagenome | 151 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181419_10036181 | F004629 | AGGA | MIPTKLTVDQLDNYFQTATYVERFMPSPLSIKNKRTEMFYIIDKLYGIGKDKDSYKNEDKPRLKIRLNGEQIQIYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKRFFLPISHEQCRIKYYNALYELLKLYHLKGRAYFLK |
Ga0181419_100361810 | F015659 | AGGAG | MIERSLKDAIQQFRQNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKEITKPINKPTAKSKANTKELADEWIEVLKKTATHSASVGKFEQNLNPLRQEYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK |
Ga0181419_10036182 | F011253 | GAGG | LNKKLEIDKIIKNFAKNKSLPYANAITKIKKDRKGYFQAKDIKQQQKSLSTDRFQQYLKDIQENDTD |
Ga0181419_10036184 | F004990 | AGGA | LELDDYFDLKKPCCICKKGADLRENNKYYCCDHYSLYVLGKPMSQIEKELEE |
Ga0181419_10036185 | F008915 | N/A | MGFIVDNEIITLDLYEMQSASHLGILRCLESEKHKESWGYNYKGSLNDQIAKSISGAMGEVAASKFLKIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKNNNSLIIRPKAKPNEFYILVIDEAPKFKILGFVNSTYVLGQEKWKTTFGLDRPFCYSIPPEKLTPIDLLKDSTWN |
Ga0181419_10036187 | F046315 | N/A | MNNLLNKKFMEYSVKSSYNSEFVESYMKRKDLLPKEFKFRRTALDLLLKESNKKISDFVKDTYKENEEKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFCDLDTVVSANFFIGETCQISVFGSLFGNGQIDINKGKDIYKINIHPKYSNCLAVESKIGSSRGLMRLYVPKKNIDRNADNRFAIAQDKKTKIIWFGFLEPKSNGKYDILDKSYSTGKTIGQLAENINLAWSSEIKASYYPTIYNI |
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