Scaffold Ga0181419_1003618

Overview

Basic Information

• Taxon OID: 3300017728
• Scaffold ID: Ga0181419_1003618
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4932
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F015659	Metagenome	253	Y
F046315	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181419_10036181	F004629	AGGA	MIPTKLTVDQLDNYFQTATYVERFMPSPLSIKNKRTEMFYIIDKLYGIGKDKDSYKNEDKPRLKIRLNGEQIQIYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKRFFLPISHEQCRIKYYNALYELLKLYHLKGRAYFLK
Ga0181419_100361810	F015659	AGGAG	MIERSLKDAIQQFRQNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKEITKPINKPTAKSKANTKELADEWIEVLKKTATHSASVGKFEQNLNPLRQEYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK
Ga0181419_10036182	F011253	GAGG	LNKKLEIDKIIKNFAKNKSLPYANAITKIKKDRKGYFQAKDIKQQQKSLSTDRFQQYLKDIQENDTD
Ga0181419_10036184	F004990	AGGA	LELDDYFDLKKPCCICKKGADLRENNKYYCCDHYSLYVLGKPMSQIEKELEE
Ga0181419_10036185	F008915	N/A	MGFIVDNEIITLDLYEMQSASHLGILRCLESEKHKESWGYNYKGSLNDQIAKSISGAMGEVAASKFLKIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKNNNSLIIRPKAKPNEFYILVIDEAPKFKILGFVNSTYVLGQEKWKTTFGLDRPFCYSIPPEKLTPIDLLKDSTWN
Ga0181419_10036187	F046315	N/A	MNNLLNKKFMEYSVKSSYNSEFVESYMKRKDLLPKEFKFRRTALDLLLKESNKKISDFVKDTYKENEEKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFCDLDTVVSANFFIGETCQISVFGSLFGNGQIDINKGKDIYKINIHPKYSNCLAVESKIGSSRGLMRLYVPKKNIDRNADNRFAIAQDKKTKIIWFGFLEPKSNGKYDILDKSYSTGKTIGQLAENINLAWSSEIKASYYPTIYNI