NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181419_1003618

Scaffold Ga0181419_1003618


Overview

Basic Information
Taxon OID3300017728 Open in IMG/M
Scaffold IDGa0181419_1003618 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4932
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004629Metagenome430Y
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y
F011253Metagenome293Y
F015659Metagenome253Y
F046315Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0181419_10036181F004629AGGAMIPTKLTVDQLDNYFQTATYVERFMPSPLSIKNKRTEMFYIIDKLYGIGKDKDSYKNEDKPRLKIRLNGEQIQIYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKRFFLPISHEQCRIKYYNALYELLKLYHLKGRAYFLK
Ga0181419_100361810F015659AGGAGMIERSLKDAIQQFRQNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKEITKPINKPTAKSKANTKELADEWIEVLKKTATHSASVGKFEQNLNPLRQEYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK
Ga0181419_10036182F011253GAGGLNKKLEIDKIIKNFAKNKSLPYANAITKIKKDRKGYFQAKDIKQQQKSLSTDRFQQYLKDIQENDTD
Ga0181419_10036184F004990AGGALELDDYFDLKKPCCICKKGADLRENNKYYCCDHYSLYVLGKPMSQIEKELEE
Ga0181419_10036185F008915N/AMGFIVDNEIITLDLYEMQSASHLGILRCLESEKHKESWGYNYKGSLNDQIAKSISGAMGEVAASKFLKIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKNNNSLIIRPKAKPNEFYILVIDEAPKFKILGFVNSTYVLGQEKWKTTFGLDRPFCYSIPPEKLTPIDLLKDSTWN
Ga0181419_10036187F046315N/AMNNLLNKKFMEYSVKSSYNSEFVESYMKRKDLLPKEFKFRRTALDLLLKESNKKISDFVKDTYKENEEKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFCDLDTVVSANFFIGETCQISVFGSLFGNGQIDINKGKDIYKINIHPKYSNCLAVESKIGSSRGLMRLYVPKKNIDRNADNRFAIAQDKKTKIIWFGFLEPKSNGKYDILDKSYSTGKTIGQLAENINLAWSSEIKASYYPTIYNI

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