Scaffold Ga0181419_1000392

Overview

Basic Information

• Taxon OID: 3300017728
• Scaffold ID: Ga0181419_1000392
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15288
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058510	Metagenome / Metatranscriptome	135	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181419_100039214	F083373	N/A	MSTHPFDTSNFASVKLKNVPSYLQNDAADYNLRVAAWFDNYAVNAAQFDAAMADQDRRWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPEGQHESEWTGPLPEYTLL
Ga0181419_100039216	F076587	GGAG	MAHAQLISFSYTKGSDVLHVQAIVDDAVQVLPATHLDPAEFDSAHCQAVILWDEPLDHTNAPTREQVLRMLPWITDWCVIPPIEFDD
Ga0181419_100039220	F058510	N/A	MLSQETELNFRLTRYADILPVEVCVTFAAADSNKRPYIEGSIIHPSREIYDRLNSPATTMRCYCHSDMPLEQQQETIASIEPGTTIRALAQQPSTKYDNKAFGTLISSFNTFESESKKVQVFTHAPGVKQTFTVSNMPSDLVERMDAKLDDIDVKRTYFLKKLINKFLAGDFDEDFV