Scaffold Ga0181401_1029802

Overview

Basic Information

• Taxon OID: 3300017727
• Scaffold ID: Ga0181401_1029802
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1574
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM19-C184 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F020110	Metagenome	226	N
F044802	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181401_10298021	F020110	N/A	MSTQLEVKARLSYARAMLERNIPTNTLATLISSKFHVCRSTAYNDIQAAQAEIDLSDDGPSFEEASEPINTDSVLAMLQHRLEVCVATGDDKAVCSLIKAMNQAKQWNGY
Ga0181401_10298024	F044802	AGG	MTHDPTSTALYRAQEDLRMLETCPTWYDHLDKVEAAIAAEERVYDIRVAAGWELDEGGWWAPCPETGEMIQEWDWISFGLAYPEDAK
Ga0181401_10298025	F019754	N/A	MNHDKDDFMLPSELEPAWPPSDDDIEAMELDAYDRQKLQDLIDQELFMDEMAGVPTPQQLNPGLK