Scaffold Ga0181401_1018638

Overview

Basic Information

• Taxon OID: 3300017727
• Scaffold ID: Ga0181401_1018638
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2092
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F025411	Metagenome	202	Y
F058071	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181401_10186381	F003531	N/A	RKKWTENETELARQLLKKHSYATVGKMLHRSKNSVIGQFYREKVMNGYTPDPFSKYTRKKERNIHVNN
Ga0181401_10186382	F025411	GAG	MSITRVYRDRDNKIKVEKFSFEEVKKDLTKFFSHDNRINNRKDKNETKNFTKYTKIS
Ga0181401_10186383	F005656	AGGA	MKLRTLLNIQRSVEERAIPSDVLEFDSTHYSKSKDVEINILDLHLTHAIRILNNYLNDTLYPEYPDRQQINDTLNVIKDNVDDIREVVNK
Ga0181401_10186387	F058071	N/A	MVTERSNFMKEVKNYEWSSLLDLTGKGLNQFNAVDQNLNCSQLMNNANLNWDVEMKPVLFETDNFITKKSDKFFSLVKDKKEVLTSGLTDSYHPMQNDQIARIGDHVARNTGIKFEHAFSYDRDKYVTFL