Scaffold Ga0181401_1002329

Overview

Basic Information

• Taxon OID: 3300017727
• Scaffold ID: Ga0181401_1002329
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7041
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027155	Metagenome	195	Y
F103167	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181401_10023295	F103167	N/A	MERTQARIVDVPIDELHDDHVNKGEFVEMEQDYLTNMFKDLVTEEGYELGAEFDLGETHGADYYAERNPGFPDEWYEILADEHKLLNKEYKDNSILSITNGVPNGHSEQADDCEPEVEAGPPTAPSENIKDVEPKVEQLVPSPPAIP
Ga0181401_10023298	F027155	N/A	MPNFYRTLHNTFSFMAETSFNYVREGDGIVTFVSTEGKYRVVMRAWVDDEDWETFHNNIGEATPKMNEYVEMIKE