Scaffold Ga0181381_1054753

Overview

Basic Information

• Taxon OID: 3300017726
• Scaffold ID: Ga0181381_1054753
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 871
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028349	Metagenome / Metatranscriptome	192	Y
F047360	Metagenome	150	Y
F049285	Metagenome	147	N
F067202	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181381_10547531	F028349	GAGG	MKVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEVGDVGYFKPRLGTPESIYDWTYVKEITDEDLMKVLGR
Ga0181381_10547532	F067202	AGGAGG	MQYKDIVIAAEDLECHTIDTVAEAIRDHIIDLELATPKTLTGFTWRIDVRMRTDNES
Ga0181381_10547533	F049285	AGGAGG	MKLIKVRVNRTIEYEVSVSVDNDHKYEQVRDYLQTIDWDKEIGISPQNYKQISDYYDWIDWETTQCLNKRHTQ
Ga0181381_10547534	F047360	N/A	AAFAHDPHLELANIIKQISKDVDAFVCVERTKTIRDYNGNKVGEWTIGG