Scaffold Ga0181381_1005856

Overview

Basic Information

• Taxon OID: 3300017726
• Scaffold ID: Ga0181381_1005856
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3017
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F008877	Metagenome	326	Y
F050002	Metagenome	146	Y
F053565	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181381_10058562	F050002	N/A	MANYYVKTIHSDLGNFDMYLQEHFARVSYDDDSDINACITDMKYVSKRLKKLDRIEKVLNKN
Ga0181381_10058563	F053565	N/A	MMKKNKDTCQNTLTASGKKDLSMKELQALTCLSILSVQGVIYIHYKNKQLNKKQRGIKWQTTT
Ga0181381_10058564	F008386	AGGAG	MSSEKQLILIILTAVVVFGYQYIKDEKKKDDEKKQRHLSKYFDSKW
Ga0181381_10058567	F008877	GGAGG	MKAKYFVSILKILKDKYGFNFNINDTMQQAQDKIDNVNTFKYISKTNGSHLAANVVDFLKERDQKKRGEK