Scaffold Ga0181381_1000432

Overview

Basic Information

• Taxon OID: 3300017726
• Scaffold ID: Ga0181381_1000432
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13037
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F003482	Metagenome / Metatranscriptome	484	Y
F018105	Metagenome / Metatranscriptome	237	Y
F027318	Metagenome / Metatranscriptome	195	Y
F077173	Metagenome	117	Y
F094409	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181381_10004321	F077173	N/A	MYILLIFHTQDCTTLNAMWFYDTIKDMINHTKGVIRYSDVNKKTRVYKTAKSFFRILKINDDDNTLYFK
Ga0181381_100043213	F018105	N/A	MSYNLDTPYSSQVVFMNSENSVFKQIDGQGEYTYSFNTPIQLPTNTDMLISVTDATFPNVIPNVTSLNNKISFYVPIFSKYFTVTLIEDDGNIDKVYTVTEWLSYVNAKIVIEATGQFTLYGEFHVSSSKIKWFSNFEFKIINTDSYPTTCYDLIGFAKTRSNTPSYVDEANGILLTSTTNPSYHIPMPSIVNFSGTRFIFLKFKDINVPNLNSGGNTDNSIVRIDNNAPYGYYIFYRPMEIQRFIIRKRTINNISFTLTDTRGQELNIFSGDAQITLKIDFIYKAELRSMEQGTIQYELRKLAEIPKLTPKEFEGQYNPESNEFLRE
Ga0181381_100043214	F027318	N/A	MAMHQGTMKLTPQQANYIPAGKFIYTDETFSVKQPISSEEAFPRQGKQLIPAYFSFKHGSQEFQPVYQPAPSLPMNFGSYIYNIVDGFQ
Ga0181381_100043216	F001894	N/A	MPRMNEAAEIAKIHYRFQVGENREKQDKYAKRKLGRLGYKLDSANTNKDVLTATRGDNVHINYTGTNVNNPRDLLSDAALATGVQKSNEDFKSRRKQTRDIMRQYGDDKDYSLGGHSLGGSHALNNMSQSKSIRDRVKSVHVFNPGYTLPFHNSIKVDKETKKQLDKKVNVHRVKGDVVSAHSNKETAFGNVFEYKHEDKQADLLDKHTLETFTNTDL
Ga0181381_10004322	F094409	N/A	MPYHNCSYLFLHEAQRDVTTWRNLPTLPNSRRECYITITDCKLVFASTETHESVNLKMIIPTLNYTSSSNDSPIVAMLNTADKKVYDMQHENNIHLLTNDSLKKCEFILEDNNGASITIDGGDSLEIMIKIEYIDQAKETENYLSEIPKLL
Ga0181381_10004329	F003482	N/A	MEENIDELNKQLLDLKVAKEFKDTIKDTRNLIKRDTVNIPSLDQLDDNNKGLWVDHDNNNFAKMFEGLLDYCADEEEFDNLDWNTVNYQVYGADYYEEKFPGFSEEVYEILAKSTEEENKVIDNRIPPIEIKHGEFTVSFD