Scaffold Ga0181381_1000012

Overview

Basic Information

• Taxon OID: 3300017726
• Scaffold ID: Ga0181381_1000012
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50841
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (77.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007945	Metagenome	342	Y
F058530	Metagenome	135	N
F106110	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181381_100001217	F007945	GAGG	MMSMIKGYTSVFQCIGDAYISKDAHRFYYGYLLCIRAKTNIKALHKYLINRHNFNRVICAQLLRKARIK
Ga0181381_100001225	F106110	N/A	MEKSKDVEILVTGVSMSGEVKLNEHNRTTEENKEQSTRTEICDSREDD
Ga0181381_100001267	F058530	AGGAG	MTNGNNENEVLRHKRRGYLAYFKDGVHDAIINEEQDTEKTFSDYYKQGYKHGSYIRDKMLIKEIPYG