Scaffold Ga0181398_1032905

Overview

Basic Information

• Taxon OID: 3300017725
• Scaffold ID: Ga0181398_1032905
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1273
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F022198	Metagenome	215	N
F030097	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_10329052	F022198	AGGAG	MKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFAVSGFMLIAPGRCLAIHENGNIFPLRLKESY
Ga0181398_10329053	F009110	GAG	MTGSMIASAVRYMESIKDKVPPEGEEDIIVKHGTTHMRTLGIDPHEAVKAVDKLREQGMTARDAYGQVGMTQSQYYKTKKGVTNRK
Ga0181398_10329054	F030097	N/A	MKAIDTAGTQSKISSCMGFVASGAARDAYRRLLTASTVGESKGEQRKSPFSKTTKEKVKK
Ga0181398_10329055	F006684	GAG	VNKIIISYIIASALALGLLNHAVNKAQDNIETLAEVLVHHADTLEDHRGVLLQMIDDLTITPM