NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181398_1006371

Scaffold Ga0181398_1006371


Overview

Basic Information
Taxon OID3300017725 Open in IMG/M
Scaffold IDGa0181398_1006371 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3087
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021557Metagenome218N
F054939Metagenome139Y
F064806Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0181398_10063716F064806GAGMFKFIFGVIVGFMIFKFDWIDSMSDAINDYGVREAIIEKLQEEVDIDNLNNGGEIE
Ga0181398_10063717F021557GAGGMRVIICALLLTSNAIACDYKSNDKVVFKGNIESVRLIDKKVYPYVDDTRICSIEIESRIEGEWYPSKSKYIFGSEMSEDTACSLAENRAKVKVMRKIIPETLTSERNLKCDLTTVRNSCKIIYMNVEMPMVGTQRVKLKTCEE
Ga0181398_10063718F054939AGGMTVYTFTCTIMVCMYLAYLWGRKLTKGEIAAEVAEGTLNRLEKEGFIKYIVNKKTGEKEFKRFK

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