Scaffold Ga0181398_1005469

Overview

Basic Information

• Taxon OID: 3300017725
• Scaffold ID: Ga0181398_1005469
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3356
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F005038	Metagenome / Metatranscriptome	414	Y
F026711	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_100546910	F001839	AGGA	LKYFEKIDKDLLNNRALNSHEKLIYIICKSFENAPNKCRISHKYLMIRTGIKTKATLIRYLDRLTLFGLLARKQIDNGTCHYVFDKPTMQEYILHNTNKRKKISLSKNRHNRNLNAALSSPNVINMGKVIKXLYNFGGIKNLNWRYXKRYLI
Ga0181398_10054692	F005038	AGGAGG	MKAKDINIYKLFSATYKKRKMFSFMGFGKLSIMPKVDKPIRQVSNVYQFPIHQYYNQKRRVK
Ga0181398_10054693	F026711	AGGAGG	MSNRISQYDAQMIADWFNGSNLVHSSIANNKKIKKLFEQSEKLRLKAHKIIVDDATWKFTFKRGNQRQLKVKYNYEKEG
Ga0181398_10054698	F004629	AGGAGG	MIPTKLTLQELDNYFQTATYVERYMPSPLNMKNKRTEMFTLIDRLYGIGKDKDCYKDETKPKMRIRLNGEQLQIYEFCILLMVKGSEKDRDIIGLRHFPFKRSFRELRKFFLPDSHEKVRQAYYKALLELLKIYNKHGYKYICK