Scaffold Ga0181398_1003901

Overview

Basic Information

• Taxon OID: 3300017725
• Scaffold ID: Ga0181398_1003901
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4009
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F020110	Metagenome	226	N
F023484	Metagenome	210	N
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_100390110	F023484	GAGG	MNINTKDGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVIDGDEVAKCKTFIRNHS
Ga0181398_100390113	F098218	GAGG	MTSFSSWSKRPEDMRAAAKARAIAALHQKHSKGLTTLERAYLHAIKTGRLDPDD
Ga0181398_10039017	F019754	AGGA	MNHNTDDFMLPSELEPEWPPSDDDIEAMELDAYDRQKLDDLMAKELWLESLPSVPTPAELNPNLN
Ga0181398_10039018	F020110	N/A	MSTHLEVKARLSYARAMLERDIPTNTVATLLSSKFVICRSTAYNDIQAAQAEMNLSDDGPSLEEASEPINTDSVLAMLQHRLEVCVATGDDKAVCSLIKAMNQAKQWNGYRTQSASPFT