Scaffold Ga0181398

Basic Information
Taxon OID	3300017725 Open in IMG/M
Scaffold ID	Ga0181398_1000942 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8591
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8591

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (38.46%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032087	Metagenome / Metatranscriptome	181	Y
F058510	Metagenome / Metatranscriptome	135	N
F058511	Metagenome / Metatranscriptome	135	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_100094212	F058510	N/A	MLSQETELSFKVGRYADSLPVEVCVTFAAADSNKRPYIEGAIIHPSQEVYDRLNNPATSMHCYCHSDMPLQQQQEMIASVEPGTTIRVLAQQPSTKYDSKAFGTLISSFNTFESESKKVKVFTHAPGVKQTFTVSNMPSDLVERMDAKLDDIDVKRTYFLKKLINKFLAGDFDEDFV
Ga0181398_10009422	F058511	N/A	MTRYALKTTHGTHVMYLAAYYANFPKNNGIRLTDKAEDACSYVTIEKACQVARSLEDSMGCVPSIVEVSY
Ga0181398_10009424	F032087	GGA	MLPMPPETGRQIVMKFLQYEIARASTADLLRAANFLEGAREVRRGCRKQRTKARKDQQTGWRKHVDDAHLW
Ga0181398_10009426	F083373	N/A	MSTHPFDTSNFASVKLKNVPSYLQNEAADYNLRVAAWFDNYAVTAAQFDAAMADQDKLWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPEGQHESEWTGPLPEYTLL
Ga0181398_10009429	F076587	GGAG	MAHAQLISYSYTKGSDVLHVQATVDDAVQVLPATHLDPPEFDSAHCQAFILWDEPLDHTNAPTHEQVLRMLPWITDWCVIPPIEFDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181398_1000942

Overview

Ecosystem & Geography

Associated Families

Sequences