Scaffold Ga0181398_1000459

Overview

Basic Information

• Taxon OID: 3300017725
• Scaffold ID: Ga0181398_1000459
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12137
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (31.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055275	Metagenome / Metatranscriptome	139	Y
F056155	Metagenome	138	Y
F079342	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_100045922	F056155	GAGG	MLIRMAGQALKPMVNTGEGCASKPETYPAKPRGGTSHGPQLLGQKYV
Ga0181398_10004594	F055275	N/A	MEETEITFTMNERSVRALHSAVVFTLDKWTGQGELDQECLLGIKPALQGCVFEFDFNRPT
Ga0181398_10004596	F079342	AGGAG	MSNIQVMSIESARKKMARARKELELAKINDTVYRGTRYSIHHEPAETHGTFVYRGRTYTK