NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181388_1040883

Scaffold Ga0181388_1040883


Overview

Basic Information
Taxon OID3300017724 Open in IMG/M
Scaffold IDGa0181388_1040883 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004850Metagenome / Metatranscriptome421Y
F023317Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0181388_10408831F023317N/ATIDKVAMSEFDMHYYQLGDNEKQWCHDEMINNKKWLTPFWKQEGYQSETDKLCEELGILNYKNNN
Ga0181388_10408832F004850N/AMINNYEFEIYYGEIEEPLYLTNDKNYICEEMYDFMQDELGIVMEEVIYKVEKI

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