NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181388_1009448

Scaffold Ga0181388_1009448


Overview

Basic Information
Taxon OID3300017724 Open in IMG/M
Scaffold IDGa0181388_1009448 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2529
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F003976Metagenome / Metatranscriptome459Y
F015812Metagenome / Metatranscriptome252Y
F035272Metagenome / Metatranscriptome172N
F051470Metagenome144N
F061778Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0181388_100944810F051470N/AGAGQMSNDNKWIHDYYDERWQHYYDELCKDIKDIGQVEEMADRMAMEDVDNLEM
Ga0181388_10094483F003051N/AMKTKILKNKVTIDMSVSEYDTLFKYINKLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK
Ga0181388_10094485F015812AGGAGMNKTLYKRLEDICAREYVINKLTKDKFRTFVDFLYDDIRTWDNPTEVSDNDVMYRIEEHLSHMVARILTNTHTGTTHD
Ga0181388_10094486F061778AGGAGGMNKYNVAVHYEEGFSVEVTAPNVEDARKLAQELVDTYCGVSESFDNVGQDEGKYLETYHRDCWIVGER
Ga0181388_10094488F035272AGGAGGMTYKQWCDFRELLTTLSDEVDSKICDVKVSEAFDDVWDMVDEIDTTQEIT
Ga0181388_10094489F003976GGAMSRTYNDYYFEKLDILDTLDKLGMSVRFLDKWIDEPEGLENARYILEKNANRKFNWFDTNMIRELLEEEVR
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