Scaffold Ga0181388_1004102

Overview

Basic Information

• Taxon OID: 3300017724
• Scaffold ID: Ga0181388_1004102
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4067
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F021404	Metagenome	219	Y
F022084	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181388_10041021	F021404	GAGG	MTYAIGDRIEYFFKGDEDNEPCEDVMIVKALKDLDNEEVFKLKPTANNKNVLVKGDYDRSTGKYWATKWHDINNETLKDGNTLVFTNFIF
Ga0181388_100410213	F003976	AGGAGG	MSRTYNDYYFEKLDILDTLDKLDMSVRFLDKWVDEPEGLENARYILEKNANRKFNWFDTNMIRELLEEE
Ga0181388_10041025	F022084	AGGTGG	MKHIEYLKRLFNYIESKGYTVDCECEGEGITQDEALTQVDDAHIYIIDKDGYSLGWIYWTFWNDWDESISDYTLELEKILKLDEFIEWNVK