NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181362_1041490

Scaffold Ga0181362_1041490


Overview

Basic Information
Taxon OID3300017723 Open in IMG/M
Scaffold IDGa0181362_1041490 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)969
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001897Metagenome / Metatranscriptome620Y
F086582Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181362_10414901F001897N/AHIIEFNAEKGYVLVQAKAWRNQTEMDPAGIDYAYGYLAAYPDKMKRWFVEDTVTSALMRVMVLVMGGAEKATKEVMAAIKTPAADYDYWTTKHGDVPSYKTAAEAEQSGTPSFGSSDDAAWSADATPSCVHGAMRWNQSKPDAIKQWAGYFCSEKIKEKQCRPNWYVLTSDGTWKPQV
Ga0181362_10414903F086582N/AMMDRIEEVQCMIAAIQHCHDRSADHNSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYEYTPGITWDKSKADVGEHIEVKW

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