NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181362_1038424

Scaffold Ga0181362_1038424


Overview

Basic Information
Taxon OID3300017723 Open in IMG/M
Scaffold IDGa0181362_1038424 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1012
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015970Metagenome / Metatranscriptome250Y
F042184Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0181362_10384242F042184AGGMEFDIELYDLDIEIKTWVEWEDDPEYSPNEGVYNKFNWVVYLQVGNQRIDITDDLSSKECKSIEEQIEEFSRDSI
Ga0181362_10384243F015970AGGAGVTASNKALWEAYQELNDDDIMDAIAGSVAIPLAIKSGDWEYAQHFIKERIENKMQRRAELALYESIKTPSIDSDDELRILRTLWLKKNYKGDNDET

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