Scaffold Ga0181347_1070052

Overview

Basic Information

• Taxon OID: 3300017722
• Scaffold ID: Ga0181347_1070052
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1035
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181347_10700521	F019136	N/A	MSLTIKNYNKLESWSHNYKEFMIGEVTETETEYCFRVGYNSIPYTIKIFRHATSTMEYEVVLRDGSNMMQYGREWIKGRKLKSKELTALIFEALIVKFKPKAQTQTNNNINYFPT
Ga0181347_10700523	F017826	N/A	MDKLKRIWNVVCVPMAFFLGAMNMWIGETAVGCMFILFATNETINKND
Ga0181347_10700524	F013759	N/A	MKVEFGMSVFSKRETLLGIELTTHNGIVASEDTLYEQRVVEFSIGIIFAIFTIGFVSKGEKIDTPDMDNLQRAMKSFESEMDKS