Scaffold Ga0181347_1061363

Overview

Basic Information

• Taxon OID: 3300017722
• Scaffold ID: Ga0181347_1061363
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1120
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F007747	Metagenome / Metatranscriptome	345	Y
F011918	Metagenome / Metatranscriptome	285	Y
F039993	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181347_10613631	F011918	N/A	IDLKNRKVNKKYNTPPFYPHDGQQLWAYRNASENPQAACVSVVLASNDPEYIEHHQWDEDELYQAGIAFCAMQKVWAWVKSYTPPGMKL
Ga0181347_10613632	F002009	GGAG	MTPPTIAEMGDAAADIVWRVMGRGSEKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETAADHLERALVRCLFTLAQIKKEVPRL
Ga0181347_10613634	F039993	N/A	MKLALSWLLYHLGDIMSLTLMRWGYGYGFYNKVMLLSSDLDKHGKIWKEAK
Ga0181347_10613635	F007747	AGGA	MKLGMIKFGKSRPAPKAVLVDITFDDKTGNNLFKLGLKLIQKDKDTVIGYVIR