Scaffold Ga0181347

Basic Information
Taxon OID	3300017722 Open in IMG/M
Scaffold ID	Ga0181347_1002003 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017722 Open in IMG/M

Scaffold ID

Ga0181347_1002003 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6809
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (6.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6809

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (6.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F037223	Metagenome / Metatranscriptome	168	N
F063401	Metagenome	129	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181347_10020031	F063401	N/A	MKRNIIHIIYPADKVVSFIHESDDTVENILESAFGMFNHGSGSESELFLKSNYRSRSVNDIVGINDKYYLCLSFGWKEVTAEFLNDLEEEVENNPNMIHSPWHALQDVMWKRQDSVMETV
Ga0181347_100200315	F001009	N/A	MASNLNSEFNYRYQVIGSTPWEKIKTLKGFLEGRKRAEALEKVAELKHRAKLEELKHLKQIAALPHVILTLEAELIELESTLEDTAHAFALNKQEIVIIKKLLAELYEIAEPTRIPGYTDDQMFEANANNEFTVTIGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLIGLVPKETILLENSDIDNILKLNNIIEIKLIE
Ga0181347_10020036	F037223	N/A	MTLFEHILIESRVDDFKNLLRKRFSIDYVLKIVNRDTSKNHKNLMWIGKILMTEPDINDVDLFKNLEIYNKVGSSTDLYSFKDYGTFLDFLEKRSKEVQMGKMAQIKANTKTIEDNKRWLVVSPQTHDASKYFGGGTSWCISTSNEKYWKEYYHANTIVMIKDRTKKPDHLLFKVAIVGNASEQFWRTKSDDKLDKITDLIPHVNLWNTNDDKLSRDQQINYLNQLPEDLIDDLMNYFNDDNPPERQQDYYYQLASDRFAEDGKDIILQQLYNATVETLDVDTDLDEDEFGDVMSRQFADEIQDGNWNDFLSELWSACISNQGVDDDDFRPDVRSRNLNNLISDTTYDQNVYLDLAREVLINSDVSNMEDIIKGALIITQDNGNPYTVIKRQANQLQGTNFNDILLTSLKMYNAKYNPNYMQQRSFGPEFAGIINKFTPRNIQDVVKVLSINPRAKDMVDMIQKYRRDLYESKKMSIKYRDFYKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181347_1002003

Overview

Ecosystem & Geography

Associated Families

Sequences