NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181373_1061721

Scaffold Ga0181373_1061721


Overview

Basic Information
Taxon OID3300017721 Open in IMG/M
Scaffold IDGa0181373_1061721 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)674
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013187Metagenome273Y
F104989Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181373_10617211F013187AGGAGMPTKNKIKKKPVRNTWVWIFGDEMQEIWEHFGFPNPDPDDKMKLKFVKYETREMQNG
Ga0181373_10617213F104989GGAGGMTEQNLTPEEHWELHQGLWSNLGCDMQVYKQDSDRIIYIDKNSKWAYKYENGVIERKLQTNPDRRYRXT

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