Scaffold Ga0181373_1006598

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1006598
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2209
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049285	Metagenome	147	N
F067202	Metagenome	126	Y
F081883	Metagenome	114	N
F089518	Metagenome	109	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10065983	F049285	AGAAGG	MKLIKVRINRTIEYEVSVGVDNDHKYEQVRDYLQTIDWDREIGISPQNYKQISDYYDWIDWEEAQ
Ga0181373_10065986	F081883	GAGG	MTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLNDVSWHQTADTVSNYKLDDERELNFDREDNLR
Ga0181373_10065987	F067202	GAGG	MRFKDIVITAEDLECHTIDTVADAINEHIIDLGLATPETLTGFNWRLDVRMRMDNDDT
Ga0181373_10065988	F096197	AGGA	MTNFTKEKLKAIREAMQLGLDRMQDEIEGITFNVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILSRLDTSKVHDYHDHRSVRYRMQLVGYKTKAKKMPWIVEDRLSGNEYKLTDVQARQWFEYEVQS
Ga0181373_10065989	F089518	N/A	CFAYHSTKDTSELDRLVAKYLSMRGITIEVKKRNLS