Scaffold Ga0181373_1003086

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1003086
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3253
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F023593	Metagenome / Metatranscriptome	209	N
F050383	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10030866	F000352	N/A	MRTIKLTDNDCTFVHYVLRMYAQQTPGLDQEDKEEIREVAAKFK
Ga0181373_10030867	F023593	GAG	MSEIDGIAQYQADVILETLKEQVEWSIADYDLNGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNSIISG
Ga0181373_10030869	F050383	N/A	MKYLYQQLDELLNTIKYGEASGDEDPDYLDDLYFEDVLEACNEIVKYTKE