NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181373_1002820

Scaffold Ga0181373_1002820


Overview

Basic Information
Taxon OID3300017721 Open in IMG/M
Scaffold IDGa0181373_1002820 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3403
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)15
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098661Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181373_10028202F098661N/AMNSLYKLRQEKLFNFIQSPSRTLFNIFKNNFFMIFNNDKKMIYNSKMSKKPAIIGLGIFVVLVIIALIIYLFTRPSKSTETGDVPTVKDAGIELVLNPADKSDKTEEYSIFTTEYALGEKSAKNIDVILTWTNGPTFATVGSLIFVHKVGDKKVRENVTTIDNLDSNASNQLVLKGSDITLTNDQDIVGTNTIDMYWNEVNNNNKLATIEFKIEQNHLDIPLNLTSVKNVTVPVQISSSSQAQAGVMATYTQYYILPYFYNVPIYIREANDNKGFHIIQTDGGQKQTIGGVDTFYIIQGLGKKFLSKDKDGNTLLRYDKTWKPQNEIFGSMNTVVKSAITVREAKPFKYEFIIKHLDYMATQTQHNLGAHISNVKLYDFDDTLIKTVTNDGIEFGKAPNHSGNSSEYIGAWKRTAYNVGDKLFTITSDKPVKKLTVEYGRPRYAPGWTIKENGKVRYEDVRNHDSQENPSPVTYTYTLSRFDDGIGHLWYSGYYDISEMEDIGMEYGLINPNSTHDWQYDINTYEGCRLRAIEKGYNAFGFQSIYKSDGTTGEQGTCWLRQVPNTGSHAFKSLDPTGKGGKKDKHVTGCTVKGKKVSNKC

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.