Scaffold Ga0181373_1002065

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1002065
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3933
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024651	Metagenome / Metatranscriptome	205	Y
F038851	Metagenome / Metatranscriptome	165	N
F058045	Metagenome / Metatranscriptome	135	N
F070097	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10020651	F024651	N/A	KEQIKNLKRMDDFVKNNMDRFPNDVSEKIRELITKILEKGHYYEAEADVLNMVGNEYNQWKKENR
Ga0181373_100206512	F038851	N/A	MIKPKITKPWSKEMYEYNDYVAEFMKMEIETSINEAEERDDRDTLNELMTLCGGIKYGDSYTIGELYDDCLSELKNVQNYWLHEEFPYAVSKGWVNDVELKFVGYDK
Ga0181373_10020652	F070097	GGA	MRVISENHMKWINIFFDTIYKHYCKGNNKVYQWELQRELKFLNYMKDVGEYTHDDADKLNSIKNLYQHIKNGQI
Ga0181373_10020654	F058045	N/A	MKIDNQLKHQLKAKEYSSLPQRIMMEKWEASGRDLHTYWNSIEWDSSWLKHDTPEERYAKDVTREFNTHPFKDYIEKPKEYIES